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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

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Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions



  • Chazalviel, M., Frainay, C., Poupin, N., Vinson, F., Merlet, B., Gloaguen, B., Cottret, L., Jourdan, F. (Auteur de correspondance) (2018). MetExploreViz: web component for interactive metabolic network visualization. Bioinformatics, 34 (2), 312-313
  • Gaudioso-Pedraza, R., Beck, M., Frances, L., Kirk, P., Ripodas, C., Niebel, A., Oldroyd, G. E. D., Benitez-Alfonso, Y., De Carvalho-Niebel, F. (2018). Callose-Regulated Symplastic Communication Coordinates Symbiotic Root Nodule Development. Current Biology, 28 (22), 3562-3577
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  • Herrbach, V., Maillet, F., Bensmihen, S. (2018). Adapting the Lateral Root-Inducible System to Medicago truncatula. In: Root Development (p. 77-83). Methods in Molecular Biology (Chapter 5)
  • Lonjon, F., Peeters, N., Genin, S., Vailleau, F. (2018). In Vitro and In Vivo Secretion/Translocation Assays to Identify Novel Ralstonia solanacearum Type 3 Effectors. In: Medina, C, LopezBaena, FJ, dir., Host-Pathogen Interactions: Methods and Protocols (p. 209-222). Methods in Molecular Biology, 1734. Totowa, USA : Humana Press Inc. 332 p
  • Roux, B., Rodde, N., Moreau, S., Jardinaud, M.-F., Gamas, P. (2018). Laser Capture Micro-Dissection Coupled to RNA Sequencing: A Powerful Approach Applied to the Model Legume Medicago truncatula in Interaction with Sinorhizobium meliloti. In: Nobutoshi Yamaguchi, Plant Transcription Factors (p. 191-224). Methods in Molecular Biology (Chapter 12)
  • Perrier, A., Barlet, X., Peyraud, R., Rengel, D., Guidot, A., Genin, S. (2018). Comparative transcriptomic studies identify specific expression patterns of virulence factors under the control of the master regulator PhcA in the Ralstonia solanacearum species complex. Microbial Pathogenesis, 116, 273-278
  • Navaud, O., Barbacci, A., Taylor, A., Clarkson, J. P., Raffaele, S. (2018). Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens. Molecular Ecology, 27 (5), 1309-1323
  • Morel, A., Guinard, J., lonjon, F., Sujeeun, L., Barberis, P., Genin, S., Vailleau, F., Daunay, M.-C., Dintinger, J., Poussier, S., Peeters, N., Wicker, E (2018). The eggplant AG91-25 recognizes the Type III-secreted effector RipAX2 to trigger resistance to bacterial wilt (Ralstonia solanacearum species complex). Molecular Plant Pathology, 19 (11), 2459-2472
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  • Pecrix, Y., Staton, S. E., Sallet, E., Lelandais-Brière, C., Moreau, S., Carrere, S., Blein, Jardinaud, M.-F., Latrasse, Zouine, M., Zahm, Kreplak, J., mayjonade, B., Satge, C., Perez, Cauet, S., Marande, W., Chantry-Darmon, C., Lopez-Roques, C., Bouchez, O., Berard, A., Debellé, F., Munos, S., Bendahmane, Berges, H., Niebel, A., Buitink, J., Frugier, Benhamed, M., Crespi, M., Gouzy, J., Gamas, P. (2018). Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants, 4 (12), 1017-1025
  • van der Hoorn, R. A. L., Rivas, S. (2018). Unravelling the mode of action of plant proteases. New Phytologist, 218 (3), 879-881
  • Dissmeyer, N., Rivas, S., Graciet, E. (2018). Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway. New Phytologist, 218 (3), 929-935
  • Fournier, J., Imanishi, L., Chabaud, M., Abdou Ben Abdou, I., Genre, A., Brichet, L., Lascano, H. R., Muñoz, N., Vayssieres, A., Pirolles, E., Brottier, L., Gherbi, H., Hocher, V., Svistoonoff, S., Barker, D., Wall, L. G. (2018). Cell remodeling and subtilase gene expression in the actinorhizal plant Discaria trinervis highlight host orchestration of intercellular Frankia colonization. New Phytologist, 219 (3), 1018-1030
  • Liu, M., Chen, Chen, Shin, J. H., Mila, I., Audran, C., Zouine, M., Pirrello, J., Bouzayen, M. (2018). The tomato Ethylene Response Factor Sl-ERF.B3 integrates ethylene and auxin signaling via direct regulation of Sl-Aux/IAA27 . New Phytologist, 19 (2), 631-640
  • Schaller, A., Stintzi, Rivas, S., Serrano, I., Chichkova, N. V., Vartapetian, Martínez, D., Guiamét, Sueldo, D. J., van der Hoorn, Ramírez, V., Vera, P. (2018). From structure to function - a family portrait of plant subtilases. New Phytologist, 218 (3), 901-915
  • Lema Asqui, S., Vercammen, D., Serrano, I., Valls, M., RIVAS, S., Van Breusegem, F., Conlon, F. L., Dangl, J. L., Coll (2018). AtSERPIN1 is an inhibitor of the metacaspase AtMC1-mediated cell death and autocatalytic processing in planta . New Phytologist, 218 (3), 1156-1166
  • Denance, N., Szurek, B., Doyle, E. L., Lauber, E., Fontaine-Bodin, L., Carrere, S., GUY, E., Hajri, A., Cerutti, A., Boureau, T., Poussier, S., Arlat, M., Bogdanove, A. J., NOEL, L. (2018). Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire. New Phytologist, 219 (1), 391-407
  • Cottret, L., Frainay, C., Chazalviel, M., Cabanettes, F., Gloaguen, Y., Camenen, E., Merlet, B., Heux, S., Portais, J.-C., Poupin, N., Vinson, F., Jourdan, F. (2018). MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Research, 46 (W1), W495-W502
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  • Wang, M., Roux, F., Bartoli, C., Chauveau, C., Meyer, C., Lee, H., Roby, D., McPeek, M. S., Bergelson, J. (2018). Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes. Proceedings of the National Academy of Sciences of the United States of America, 115 (24), E5440-E5449
  • Payelleville, A., Legrand, L., Ogier, J.-C., Roques, C., Roulet, A., Bouchez, O., Mouammine, A., Givaudan, A., Brillard, J. (2018). The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines. Scientific Reports, 8 (1), 1-14
  • Bastide, P;, Solís-Lemus, C., Kriebel, R., Sparks, K. W., Ane, C. M. O. (2018). Phylogenetic comparative methods on phylogenetic networks with reticulations. Systematic Biology, 67 (5), 800-820
  • Pujol, B., Blanchet, S., Charmantier, A., Danchin, E., Facon, B., Marrot, P., Roux, F., Scotti, I., Teplitsky, C., Thomson, C. E., Winney, I. (2018). The Missing Response to Selection in the Wild. Trends in Ecology and Evolution, 33 (5), 337-346
  • Serrano, I., Campos, L., Rivas, S. (2018). Roles of E3 Ubiquitin-Ligases in Nuclear Protein Homeostasis during Plant Stress Responses. Frontiers in Plant Science, 9, 1-9.DOI : 10.3389/fpls.2018.00139
  • Gourion, B., Alunni, B. (2018). Strain-Specific Symbiotic Genes: A New Level of Control in the Intracellular Accommodation of Rhizobia Within Legume Nodule Cells. Molecular Plant-Microbe Interactions, 31 (3), 287-288. DOI : 10.1094/MPMI-01-18-0010-LE
  • Frachon, L., Libourel, C., Villoutreix, R., Carrere, S., Glorieux, C., Huard-Chauveau, C., De Navascues Melero, M., Gay, L., Vitalis, R., Baron, E., Amsellem, L., Bouchez, O., Vidal, M., Le Corre, V., Roby, D., Bergelson, J., Roux, F. (2018). Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology and Evolution (2), 194. , DOI : 10.1038/s41559-017-0405-2
  • Sang, Y., Wang, Y., Ni, Cazalé, A.-C., She, Peeters, N., Macho, A. P. (2018). The Ralstonia solanacearum type-III effector RipAY targets plant redox regulators to suppress immune responses. Molecular Plant Pathology, 19 (1), 129-142. , DOI : 10.1111/mpp.12504
  • Singh, N., Phukan, T., Sharma, P. L., Kabyashree, K., Barman, A., Kumar, R., Sonti, R. V., Genin, S., Ray, S. K. (2018). An Innovative Root Inoculation Method to Study Ralstonia solanacearum Pathogenicity in Tomato Seedlings. Phytopathology, 108 (4), 436-442. , DOI : 10.1094/PHYTO-08-17-0291-R
  • Subrahmaniam, H. J., Libourel, C., Journet, E.-P., Morel, J.-B., Munos, S., Niebel, A., Raffaele, S., Roux, F. (2018). The genetics underlying natural variation of plant-plant interactions, a beloved but forgotten member of the family of biotic interactions. Plant Journal, 93 (4), 747-770. , DOI : 10.1111/tpj.13799  
  • Bonnafous, F., Fievet, G., Blanchet, N., Boniface, M.-C., Carrere, S., Gouzy, J., Legrand, L., Marage, G., Bret-Mestries, E., Munos, S., Pouilly, N., Vincourt, P., Langlade, N., Mangin, B. (2018). Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids. Theoretical and Applied Genetics, 131 (2), 319-332. , DOI : 10.1007/s00122-017-3003-4
  • Peyraud, R., Cottret, L., Marmiesse, L., Genin, S. (2018). Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen. Nature Communications, 9. , DOI : 10.1038/s41467-017-02660-4
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  • Rembliere, C., Fournier, J., de Carvalho-Niebel, F., Chabaud, M. (2018). A simple Agrobacterium tumefaciens-mediated transformation method for rapid transgene expression in Medicago truncatula root hairs. Plant Cell, Tissue and Organ Culture, 132 (1), 181-190. , DOI : 10.1007/s11240-017-1323-3
  • Délye, C., Duhoux, A., Gardin, J. A. C., Gouzy, J., Carrere, S. (2018). High conservation of the transcriptional response to acetolactate-synthase-inhibiting herbicides across plant species. Weed Research, 58 (1), 2 - 7. , DOI : 10.1111/wre.12276
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  • Herrbach, V., Chirinos, X. F., Rengel, D., Agbevenou, K., Vincent, R., Pateyron, S., Huguet, S., Balzergue, S., Pasha, A., Provart, N., Gough, C., Bensmihen, S. (2017). Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. Journal of Experimental Botany, 68 (3), 568-582. , DOI : 10.1093/jxb/erw474
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  • Mangin, B., Pouilly, N., Boniface, M.-C., Langlade, N., Vincourt, P., Vear, F., Munos, S. (2017). Molecular diversity of sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits. Theoretical and Applied Genetics, 130 (6), 1099–1112. , DOI : 10.1007/s00122-017-2872-x
  • Aoun, N., Tauleigne, L., lonjon, F., Deslandes, L., Vailleau, F., Roux, F., Berthomé, R. (2017). Quantitative Disease Resistance under Elevated Temperature: Genetic Basis of New Resistance Mechanisms to Ralstonia solanacearum. Frontiers in Plant Science, 8, 1-16. , DOI : 10.3389/fpls.2017.01387
  • Islam, F., Wang, J., Farooq, M. A., Khan, M. S. S., Xu, L., Zhu, J., Zhao, M., Munos, S., Li, Q. X., Zhou, W. (2017). Potential impact of the herbicide 2,4-dichlorophenoxyacetic acid on human and ecosystems. Environment International, 11, 332-351. , DOI : 10.1016/j.envint.2017.10.020
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  • Frachon, L., Libourel, C., Villoutreix, R., Carrere, S., Glorieux, C., Huard-Chauveau, C., De Navascues Melero, M., Gay, L., Vitalis, R., Baron, E., Amsellem, L., Bouchez, O., Vidal, M., Le Corre, V., Roby, D., Bergelson, J., Roux, F. (2017). Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology and Evolution, 1 (10), 1551-1561. , DOI : 10.1038/s41559-017-0297-1
  • Barker, D., Chabaud, M., Russo, G., Genre, A. (2017). Nuclear Ca2+ signalling in arbuscular mycorrhizal and actinorhizal endosymbioses: on the trail of novel underground signals. New Phytologist, 214 (2), 533-538. , DOI : 10.1111/nph.14350
  • Mangin, B., Bonnafous, F., Blanchet, N., Boniface, M.-C., Bret-Mestries, E., Carrere, S., Cottret, L., Legrand, L., Marage, G., Pegot - Espagnet, P., Munos, S., Pouilly, N., Vear, F., Vincourt, P., Langlade, N. (2017). Genomic Prediction of Sunflower Hybrids Oil Content. Frontiers in Plant Science, 8, 1-12. , DOI : 10.3389/fpls.2017.01633
  • Guillotin, B., Etemadi, M., Audran, C., Bouzayen, M., Bécard, G., Combier, J.-P. (2017). Sl-IAA27 regulates strigolactone biosynthesis and mycorrhization in tomato (var. MicroTom). New Phytologist, 213 (3), 1124–1132 . , DOI : 10.1111/nph.14246
  • Cerri, M. R., Wang, Q., Stolz, P., Folgmann, J., Frances, L., Katzer, K., Li, X., Heckmann, A. B., Wang, TL., Downie, JA., Klingl, A., de Carvalho-Niebel, F., Xie, F., Parniske, M (2017). The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus. New Phytologist, 215 (1), 323-337. , DOI : 10.1111/nph.14547
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  • Balague, C., Gouget, A., Bouchez, O., Souriac, Haget, Boutet-Mercey, S., Govers, F., Roby, D., Canut (2017). The Arabidopsis thaliana lectin receptor kinase LecRK-I.9 is required for full resistance to Pseudomonas syringae and affects jasmonate signalling. Molecular Plant Pathology, 18 (7), 937-948. , DOI : 10.1111/mpp.12457
  • Carotenuto, G., Chabaud, M., Miyata, K., Capozzi, M., Takeda, N., Kaku, H., Shibuya, N., Nakagawa, T., Barker, D., Genre, A (2017). The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling. New Phytologist, 214 (4), 1440-1446. , DOI : 10.1111/nph.14539
  • Zanetti, M. E., Ripodas, C., Niebel, A.   (2017). Plant NF-Y transcription factors: Key players in plant-microbe interactions, root development and adaptation to stress. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 1860 (5), 645-654. , DOI : 10.1016/j.bbagrm.2016.11.007
  • Guillaumot, D., Lopez Obando, M., Baudry, K., Avon, A., Rigaill, G., de Longevialle, A. F., Broche, B., Takenaka, M., Berthomé, R., De Jaeger, G., Delannoy, E., Lurin, C.   (2017). Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 114 (33), 8877-8882. , DOI : 10.1073/pnas.1705780114
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