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Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions

Publications

2018

  • Serrano, I. Campos, L., Rivas, S. (2018). Roles of E3 Ubiquitin-Ligases in Nuclear Protein Homeostasis during Plant Stress Responses. Frontiers in Plant Science, 9, 1-9.DOI : 10.3389/fpls.2018.00139
  • Gourion, B., Alunni, B. (2018). Strain-Specific Symbiotic Genes: A New Level of Control in the Intracellular Accommodation of Rhizobia Within Legume Nodule Cells. Molecular Plant-Microbe Interactions, 31 (3), 287-288. DOI : 10.1094/MPMI-01-18-0010-LE
  • Frachon, L., Libourel, C., Villoutreix, R., Carrere, S., Glorieux, C., Huard-Chauveau, C., De Navascues Melero, M., Gay, L., Vitalis, R., Baron, E., Amsellem, L., Bouchez, O., Vidal, M., Le Corre, V., Roby, D., Bergelson, J., Roux, F. (2018). Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology and Evolution (2), 194. , DOI : 10.1038/s41559-017-0405-2
  • Glazebrook, J., Roby, D. (2018). Plant biotic interactions: from conflict to collaboration. Plant Journal, 93 (4), 589 - 591. DOI : 10.1111/tpj.13812
  • Sang, Y., Wang, Y., Ni, Cazalé, A.-C., She, Peeters, N., Macho, A. P. (2018). The Ralstonia solanacearum type-III effector RipAY targets plant redox regulators to suppress immune responses. Molecular Plant Pathology, 19 (1), 129-142. , DOI : 10.1111/mpp.12504
  • Bedoussac, L,. Journet, E.-P., Hauggaard-Nielsen, H., Naudin, C., Corre Hellou, G., Jensen, E. S., Justes, E. (2018). Grain legume–cereal intercropping systems. In: Dr Shoba Sivasankar, Dr David Bergvinson, Dr Pooran Gaur, Dr Shiv Kumar, Dr Steve Beebe and Dr Manuele Tamò, dir., Achieving sustainable cultivation of grain legumes. Volume 1: Advances in breeding and cultivation techniques (p. 243-255). Burleigh Dodds Series in Agricultural Science. Cambridge, GBR : Burleigh Dodds Science Publishing Limited. 398 p., DOI : 10.19103/AS.2017.0023.14
  • Singh, N., Phukan, T., Sharma, P. L., Kabyashree, K., Barman, A., Kumar, R., Sonti, R. V., Genin, S., Ray, S. K. (2018). An Innovative Root Inoculation Method to Study Ralstonia solanacearum Pathogenicity in Tomato Seedlings. Phytopathology, 108 (4), 436-442. , DOI : 10.1094/PHYTO-08-17-0291-R
  • Subrahmaniam, H. J., Libourel, C., Journet, E.-P., Morel, J.-B., Munos, S., Niebel, A., Raffaele, S., Roux, F. (2018). The genetics underlying natural variation of plant-plant interactions, a beloved but forgotten member of the family of biotic interactions. Plant Journal, 93 (4), 747-770. , DOI : 10.1111/tpj.13799  
  • Bonnafous, F., Fievet, G., Blanchet, N., Boniface, M.-C., Carrere, S., Gouzy, J., Legrand, L., Marage, G., Bret-Mestries, E., Munos, S., Pouilly, N., Vincourt, P., Langlade, N., Mangin, B. (2018). Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids. Theoretical and Applied Genetics, 131 (2), 319-332. , DOI : 10.1007/s00122-017-3003-4
  • Peyraud, R., Cottret, L., Marmiesse, L., Genin, S. (2018). Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen. Nature Communications, 9. , DOI : 10.1038/s41467-017-02660-4
  • Masson, C., Sachs, J. L. (2018). Symbiotic nitrogen fixation by rhizobia — the roots of a success story. Current Opinion in Plant Biology, 44, 7-15. , DOI : 10.1016/j.pbi.2017.12.001
  • Fulgione, A., Koornneef, M., Roux, F., Hermisson, J., Hancock, A. M. (2018). Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia. Molecular Biology and Evolution, 35 (3), 564-574. , DOI : 10.1093/molbev/msx300
  • Rembliere, C., Fournier, J., de Carvalho-Niebel, F., Chabaud, M. (2018). A simple Agrobacterium tumefaciens-mediated transformation method for rapid transgene expression in Medicago truncatula root hairs. Plant Cell, Tissue and Organ Culture, 132 (1), 181-190. , DOI : 10.1007/s11240-017-1323-3
  • Délye, C., Duhoux, A., Gardin, J. A. C., Gouzy, J., Carrere, S. (2018). High conservation of the transcriptional response to acetolactate-synthase-inhibiting herbicides across plant species. Weed Research, 58 (1), 2 - 7. , DOI : 10.1111/wre.12276
  • Kelner, A., Leitao, N., Chabaud, M., Charpentier, M.  , De Carvalho-Niebel, F. (2018). Dual Color Sensors for Simultaneous Analysis of Calcium Signal Dynamics in the Nuclear and Cytoplasmic Compartments of Plant Cells. Frontiers in Plant Science, 9, 1-14. , DOI : 10.3389/fpls.2018.00245

2017

  • Herrbach, V., Chirinos, X. F., Rengel, D., Agbevenou, K., Vincent, R., Pateyron, S., Huguet, S., Balzergue, S., Pasha, A., Provart, N., Gough, C., Bensmihen, S. (2017). Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. Journal of Experimental Botany, 68 (3), 568-582. , DOI : 10.1093/jxb/erw474
  • Liu, Y. , Wu, D.  , Liu, Q., Zhang, S.  , Tang, Y., Jiang, G., Li, S.  , Ding, W.   (2017). The sequevar distribution of Ralstonia solanacearum in tobacco-growing zones of China is structured by elevation. European Journal of Plant Pathology, 147 (3), 541-551. , DOI : 10.1007/s10658-016-1023-6
  • Mangin, B., Pouilly, N., Boniface, M.-C., Langlade, N., Vincourt, P., Vear, F., Munos, S. (2017). Molecular diversity of sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits. Theoretical and Applied Genetics, 130 (6), 1099–1112. , DOI : 10.1007/s00122-017-2872-x
  • Aoun, N., Tauleigne, L., lonjon, F., Deslandes, L., Vailleau, F., Roux, F., Berthomé, R. (2017). Quantitative Disease Resistance under Elevated Temperature: Genetic Basis of New Resistance Mechanisms to Ralstonia solanacearum. Frontiers in Plant Science, 8, 1-16. , DOI : 10.3389/fpls.2017.01387
  • Islam, F., Wang, J., Farooq, M. A., Khan, M. S. S., Xu, L., Zhu, J., Zhao, M., Munos, S., Li, Q. X., Zhou, W. (2017). Potential impact of the herbicide 2,4-dichlorophenoxyacetic acid on human and ecosystems. Environment International, 11, 332-351. , DOI : 10.1016/j.envint.2017.10.020
  • Rosspopoff, O., Chelysheva, L., Saffar, J., Lecorgne, L., Gey, D., Caillieux, E., Colot, V., Roudier, F., Hilson, P., Berthomé, R., Da Costa, M., Rech, P. (2017). Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development. Development, 144 (7), 1187-1200. , DOI : 10.1242/dev.142570
  • Frachon, L., Libourel, C., Villoutreix, R., Carrere, S., Glorieux, C., Huard-Chauveau, C., De Navascues Melero, M., Gay, L., Vitalis, R., Baron, E., Amsellem, L., Bouchez, O., Vidal, M., Le Corre, V., Roby, D., Bergelson, J., Roux, F. (2017). Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology and Evolution, 1 (10), 1551-1561. , DOI : 10.1038/s41559-017-0297-1
  • Barker, D., Chabaud, M., Russo, G., Genre, A. (2017). Nuclear Ca2+ signalling in arbuscular mycorrhizal and actinorhizal endosymbioses: on the trail of novel underground signals. New Phytologist, 214 (2), 533-538. , DOI : 10.1111/nph.14350
  • Mangin, B., Bonnafous, F., Blanchet, N., Boniface, M.-C., Bret-Mestries, E., Carrere, S., Cottret, L., Legrand, L., Marage, G., Pegot - Espagnet, P., Munos, S., Pouilly, N., Vear, F., Vincourt, P., Langlade, N. (2017). Genomic Prediction of Sunflower Hybrids Oil Content. Frontiers in Plant Science, 8, 1-12. , DOI : 10.3389/fpls.2017.01633
  • Guillotin, B., Etemadi, M., Audran, C., Bouzayen, M., Bécard, G., Combier, J.-P. (2017). Sl-IAA27 regulates strigolactone biosynthesis and mycorrhization in tomato (var. MicroTom). New Phytologist, 213 (3), 1124–1132 . , DOI : 10.1111/nph.14246
  • Cerri, M. R., Wang, Q., Stolz, P., Folgmann, J., Frances, L., Katzer, K., Li, X., Heckmann, A. B., Wang, TL., Downie, JA., Klingl, A., de Carvalho-Niebel, F., Xie, F., Parniske, M (2017). The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus. New Phytologist, 215 (1), 323-337. , DOI : 10.1111/nph.14547
  • Roux, F., Bartoli, C. (2017). Genome-wide association studies in plant pathosystems: toward an ecological genomics approach. Frontiers in Plant Science, 8. , DOI : 10.3389/fpls.2017.00763
  • Balague, C., Gouget, A., Bouchez, O., Souriac, Haget, Boutet-Mercey, S., Govers, F., Roby, D., Canut (2017). The Arabidopsis thaliana lectin receptor kinase LecRK-I.9 is required for full resistance to Pseudomonas syringae and affects jasmonate signalling. Molecular Plant Pathology, 18 (7), 937-948. , DOI : 10.1111/mpp.12457
  • Carotenuto, G., Chabaud, M., Miyata, K., Capozzi, M., Takeda, N., Kaku, H., Shibuya, N., Nakagawa, T., Barker, D., Genre, A (2017). The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling. New Phytologist, 214 (4), 1440-1446. , DOI : 10.1111/nph.14539
  • Zanetti, M. E., Ripodas, C., Niebel, A.   (2017). Plant NF-Y transcription factors: Key players in plant-microbe interactions, root development and adaptation to stress. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 1860 (5), 645-654. , DOI : 10.1016/j.bbagrm.2016.11.007
  • Guillaumot, D., Lopez Obando, M., Baudry, K., Avon, A., Rigaill, G., de Longevialle, A. F., Broche, B., Takenaka, M., Berthomé, R., De Jaeger, G., Delannoy, E., Lurin, C.   (2017). Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 114 (33), 8877-8882. , DOI : 10.1073/pnas.1705780114
  • Camborde, L., Jauneau, A., Briere, C., Deslandes, L., Dumas, B., Gaulin, E. (2017). Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nature Protocols, 12 (9), 1933-1950. , DOI : 10.1038/nprot.2017.076
  • Sevin-Pujol, A., Sicard, M., Rosenberg, C., Auriac, M.-C., Lepage, A., Niebel, A., Gough, C., Bensmihen, S.   (2017). Development of a GAL4-VP1 6/UAS trans activation system for tissue specific expression in Medicago truncatula. Plos One, 12 (11). , DOI : 10.1371/journal.pone.0188923
  • Gamas, P., Brault, M., Jardinaud, M.-F., Frugier, F. (2017). Cytokinins in Symbiotic Nodulation: When, Where, What For?. Trends in Plant Science, 22 (9), 792-802. , DOI : 10.1016/j.tplants.2017.06.012
  • Soler, M., Plasencia, A., Larbat, R., Pouzet, C., Jauneau, A., Rivas, S., Pesquet, E., Lapierre, C., Truchet, I., Grima-Pettenati, J. (2017). The Eucalyptus linker histone variant EgH1.3 cooperates with the transcription factor EgMYB1 to control lignin biosynthesis during wood formation. New Phytologist, 213 (1), 287-299. , DOI : 10.1111/nph.14129
  • Ochsner, A. M., Christen, M., Hemmerle, L., Peyraud, R., Christen, B., Vorholt, J. A.   (2017). Transposon Sequencing Uncovers an Essential Regulatory Function of Phosphoribulokinase for Methylotrophy. Current Biology, 27 (17), 2579-2588. , DOI : 10.1016/j.cub.2017.07.025
  • Peyraud, R., Denny, T., Genin, S. (2017). Exopolysaccharide Quantification for the Plant Pathogen Ralstonia solanacearum. Bio-Protocol, 7 (10). , DOI : 10.21769/BioProtoc.2289
  • Martin, F., Uroz, S., Barker, D. (2017). Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria. Science, 356 (6340), 1-9. , DOI : 10.1126/science.aad4501
  • Gascuel, Q., Diretto, G., Monforte, A. J., Fortes, A. M., Granell, A.   (2017). Use of Natural Diversity and Biotechnology to Increase the Quality and Nutritional Content of Tomato and Grape. Frontiers in Plant Science, 8, 1-24. , DOI : 10.3389/fpls.2017.00652
  • Mangin, B. Casadebaig, P., Cadic, E., Blanchet, N., Boniface, M.-C., Carrere, S., Gouzy, J., Legrand, L., Mayjonade, B., Pouilly, N., André, T., Coque, M., Piquemal, J., Laporte, M., Vincourt, P., Munos, S., Langlade, N.   (2017). Genetic control of plasticity of oil yield for combined abiotic stresses using a joint approach of crop modeling and genome-wide association. Plant, Cell and Environment, 40 (10), 2276-2291. , DOI : 10.1111/pce.12961
  • Lonjon, F., Lohou, D., Cazale, A.-C., Büttner, D., Gomes Ribeiro, B., Péanne, C., Genin, S., Vailleau, F. (2017). HpaB-Dependent Secretion of Type III Effectors in the Plant Pathogens Ralstonia solanacearum and Xanthomonas campestris pv. vesicatoria . Scientific Reports, 7 (1). , DOI : 10.1038/s41598-017-04853-9
  • Kumar, R., Barman, Phukan, Kabyashree, Singh, Jha, G., Sonti, R. V., Genin, S., Ray (2017). Ralstonia solanacearum virulence in tomato seedlings inoculated by leaf clipping. Plant Pathology, 66 (5), 835-841. , DOI : 10.1111/ppa.12628
  • Brendolise, C., Montefiori, M., Dinis, R., Peeters, N., Storey, R. D., Rikkerink, E. H. (2017). A novel hairpin library-based approach to identify NBS-LRR genes required for effector-triggered hypersensitive response in Nicotiana benthamiana. Plant Methods, 13, 1-10. , DOI : 10.1186/s13007-017-0181-7
  • Le Signor, C., Aime, D., Bordat, A., Belghazi, M., Labas, V., Gouzy, J., Young, N. D., Prosperi, J.-M., Leprince, O., Thompson, R., Buitink, J., Burstin, J., Gallardo, K. (2017). Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds. New Phytologist, 214 (4), 1597-1613. , DOI : 10.1111/nph.14500
  • Daccord, N., Celton, J.-M., Linsmith, G., Becker, C., Choisne, N., Schijlen, E., van de Geest, H., Bianco, L., Micheletti, D., Velasco, R., Di Pierro, E. A., Gouzy, J., Rees, D. J. G., Guérif, P., Muranty, H., Durel, C. E., Laurens, F., Lespinasse, Y., Gaillard, S., Aubourg, S., Quesneville, H., Weigel, D., van de Weg, E., Troggio, M., Bucher, E. (2017). High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genetics, 49 (7), 1099-1108. , DOI : 10.1038/ng.3886
  • Badet, T., Voisin, D., Mbengue, M., Barascud, M., Sucher, J., Sadon, P., Balague, C., Roby, D., Raffaele, S. (2017). Parallel evolution of the POQR prolyl oligo peptidase gene conferring plant quantitative disease resistance. Plos Genetics, 13 (12). , DOI : 10.1371/journal.pgen.1007143
  • Ligerot, Y., De Saint Germain, A., Waldie, T., Troadec, C., Citerne, S., Kadakia, N., Pillot, J.-P., Prigge, M., Aubert, G., Bendahmane, A., Leyser, O., Estelle, M., Debellé, F., Rameau, C. (2017). The pea branching RMS2 gene encodes the PsAFB4/5 auxin receptor and is involved in an auxin-strigolactone regulation loop. Plos Genetics, 13 (12). , DOI : 10.1371/journal.pgen.1007089
  • Henry, E., Toruno, T. Y., Jauneau, A., Deslandes, L., Coaker, G. (2017). Direct and Indirect Visualization of Bacterial Effector Delivery into Diverse Plant Cell Types during Infection. Plant Cell, 29 (7), 1555-1570. , DOI : 10.1105/tpc.17.00027
  • Arnaiz, O., Van Dijk, E., Betermier, M., Lhuillier-Akakpo, M., de Vanssay, A., Duharcourt, S., Sallet, E., Gouzy, J., Sperling, L. (2017). Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression. BMC Genomics, 18, 1-12. , DOI : 10.1186/s12864-017-3887-z
  • Zou, L., Gastebois, A , Mathieu-Demazière, C., Sorroche, F., Masson-Boivin, C., Batut, J., Garnerone, A. M. (2017). Transcriptomic Insight in the Control of Legume Root Secondary Infection by the Sinorhizobium meliloti Transcriptional Regulator Clr. Frontiers in Microbiology, 8. , DOI : 10.3389/fmicb.2017.01236
  • Picheny, V., Casadebaig, P., Trepos, R., Faivre, R., Da Silva, D., Vincourt, P., Costes, E. (2017). Using numerical plant models and phenotypic correlation space to design achievable ideotypes. Plant, Cell and Environment, 40 (9), 1926-1939. , DOI : 10.1111/pce.13001
  • Cerutti, A., Jauneau, A., Auriac, MC., Lauber, E., Martinez, Y., Chiarenza, S., Leonhardt, N., Berthomé, R., Noël, L. (2017). Immunity at cauliflower hydathodes controls systemic infection by xanthomonas campestris pv campestris. Plant Physiology, 174 (2), 700-716. , DOI : 10.1104/pp.16.01852
  • Chazalviel, M., Frainay, C., Poupin, N., Vinson, F., Merlet, B., Gloaguen, B., Cottret, L., Jourdan, F. (2017). MetExploreViz: web component for interactive metabolic network visualization. Bioinformatics, 34 (2), 312-313. , DOI : 10.1093/bioinformatics/btx588
  • Badet, T., Peyraud, R., Mbengue, M., Navaud, O., Derbyshire, M., Oliver, Barbacci, A., Raffaele, S.   (2017). Codon optimization underpins generalist parasitism in fungi. eLife , 6, 35 p. , DOI : 10.7554/eLife.22472
  • Osdaghi, E., Forero Serna, N., Bolot, S., Le Saux, M., Jacques, M. A., Portier, P., Carrere, S., Koebnik, R. (2017). High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero . Genome Announcements, 5 (48), e01378-17. , DOI : 10.1128/genomeA.01378-17
  • Peyraud, R., Dubiella, U. R., Barbacci, A., Genin, S., Raffaele, S., Roby, D.   (2017). Advances on plant-pathogen interactions from molecular toward systems biology perspectives. Plant Journal, 90 (4), 720-737. , DOI : 10.1111/tpj.13429
  • Gronnier, J., Crowet, J. M., Habenstein, B., Nasir, M. N., Bayle, V., Hosy, E., Platre, M. P., Gouguet, P., Raffaele, S., Martinez, D., Grelard, A., Loquet, A., Simon-Plas, F., Gerbeau-Pissot, P., Der, C., Bayer, E. M., Jaillais, Y., Deleu, M., Germain, V., Lins, L., Mongrand, S. (2017). Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains. eLife , 6. , DOI : 10.7554/eLife.26404
  • Yang, L., Li, S. L., Qin, X. Y., Jiang, G., Chen, J. N., Li, B. D., Yao, X. Y., Liang, P. B., Zhang, Y., Ding, W. (2017). Exposure to Umbelliferone Reduces Ralstonia solanacearum Biofilm Formation, Transcription of Type III Secretion System Regulators and Effectors and Virulence on Tobacco. Frontiers in Microbiology, 8, 1-10. , DOI : 10.3389/fmicb.2017.01234
  • Debaeke, P., Casadebaig, P., Flénet, F., Langlade, N. (2017). Sunflower crop and climate change: vulnerability, adaptation, and mitigation potential from case-studies in Europe. OCL Oilseeds and Fats Crops and Lipids, 24 (1), 15 p. , DOI : 10.1051/ocl/2016052
  • Schaller, A., Stintzi, Rivas, S., Serrano, I., Chichkova, N. V., Vartapetian, Martínez, D., Guiamét, Sueldo, D. J., van der Hoorn, Ramírez, V., Vera, P. (2017). From structure to function - a family portrait of plant subtilases. New Phytologist, 1-15. , DOI : 10.1111/nph.14582
  • Erill, I., Puigvert, M., Legrand, L., Guarischi-Sousa, R., Vandecasteele, C., Setubal, J. C., Genin, S., Guidot, A., Valls, M. (2017). Comparative Analysis of Ralstonia solanacearum Methylomes. Frontiers in Plant Science, 8, 1-16. , DOI : 10.3389/fpls.2017.00504
  • Bellande, K., Bono, J.-J., Savelli, B., Jamet, E., Canut, H. (2017). Plant Lectins and Lectin Receptor-Like Kinases: How Do They Sense the Outside?. International Journal of Molecular Sciences, 18 (6), 1-25. , DOI : 10.3390/ijms18061164
  • Berthelot, N., Brossay, A., Gasciolli, V., Bono, J.-J., Baron, A., Beau, J.-M., Urban, D., Boyer, F., Vauzeilles, B. (2017). Synthesis of lipo-chitooligosaccharide analogues and their interaction with LYR3, a high affinity binding protein for Nod factors and Myc-LCOs. Organic and Biomolecular Chemistry, 15 (37), 7802-7812. , DOI : 10.1039/c7ob01201b
  • Di Giacomo, E., Laffont, C., Sciarra, F., Iannelli, M. A., Frugier, F., Frugis, G.   (2017). KNAT3/4/5-like class 2 KNOX transcription factors are involved in Medicago truncatula symbiotic nodule organ development. New Phytologist, 213 (2), 810-825. , DOI : 10.1111/nph.14146
  • Dissmeyer, N., Rivas, S., Graciet, E. (2017). Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway. New Phytologist, 1-7. , DOI : 10.1111/nph.14619
  • Lema Asqui, S., Vercammen, D., Serrano, I., Valls, M., Rivas, S., Van Breusegem, F., Conlon, F. L., Dangl, J. L., Coll (2017). AtSERPIN1 is an inhibitor of the metacaspase AtMC1-mediated cell death and autocatalytic processing in planta . New Phytologist, 1-11. , DOI : 10.1111/nph.14446
  • Rancurel, C., Legrand, L., Danchin, E.   (2017). Alienness: rapid detection of candidate horizontal gene transfers across the tree of life. Genes, 8 (10). , DOI : 10.3390/genes8100248
  • Capela, D., Marchetti, M., Clerissi, C., Perrier, A., guetta, D., Gris, C., Valls, M., Jauneau, A., Cruveiller, S., Rocha, E. P. C., Masson-Boivin, C. (2017). Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont. Molecular Biology and Evolution, 34 (10), 2503-2521. , DOI : 10.1093/molbev/msx165
  • Dupuy, P., Gourion, B., Sauviac, L., Bruand, C. (2017). DNA double-strand break repair is involved in desiccation resistance of Sinorhizobium meliloti, but is not essential for its symbiotic interaction with Medicago truncatula. Microbiology 163 (3), 333-342. , DOI : 10.1099/mic.0.000400
  • Marchetti, M., Clerissi, C., Yousfi, Y., Gris, C., Bouchez, O., Rocha, E., Cruveiller, S., Jauneau, A., Capela, D., Masson-Boivin, C. (2017). Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime. Molecular Ecology, 26 (7), 1818-1831. , DOI : 10.1111/mec.13895
  • Khafif, M., Balague, C., Huard-Chauveau, C., Roby, D.   (2017). An essential role for the VASt domain of the Arabidopsis VAD1 protein in the regulation of defense and cell death in response to pathogens. Plos One, 12 (7), 1-18. , DOI : 10.1371/journal.pone.0179782
  • Branco, S., Badouin, H., de la Vega, R. C. R., Gouzy, J., Carpentier, F., Aguileta, G., Siguenza, S., Brandenburg, J. T., Coelho, M. A., Hood, M. E., Giraud, T. (2017). Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism. Proceedings of the National Academy of Sciences of the United States of America, 114 (27), 7067-7072. , DOI : 10.1073/pnas.1701658114
  • Derbyshire, M., Denton-Giles, M., Hegedus, D., Seifbarghy, S.  , Rollins, J., van Kan, J., Seidl, MF., Faino, L., Mbengue, M., Navaud, O., Raffaele, S., Hammond-Kosack, K., Heard, S., Oliver, R. (2017). The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens. Genome Biology and Evolution, 9 (3), 593–618. , DOI : 10.1093/gbe/evx030
  • Bedoussac, L. Journet, E.-P., Hinsinger, P., Justes, E. (2017). Des cultures associées pour une gestion économe de l’azote et du phosphore dans les agroécosystèmes. In: Bruno Colomb (UMR 1248 AGIR Toulouse), dir., Guide de la fertilisation raisonnée (p. 541-545). Paris, FRA : Editions France Agricole. 608 p.
  • Badouin, H., Gouzy, J., Grassa, C., Murat, F., Staton, S. E., Cottret, L., Lelandais-briere, C., Owens, GL., Carrere, S., mayjonade, B., Legrand, L., Gill, N., Kane, N. C., Bowers, J. E., Hubner, S., Bellec, A., Berard, A., Berges, H., Blanchet, N., Boniface, M.-C., Brunel, D., Catrice, O., Chaidir, N., Claudel, C., Donnadieu, C., Faraut, T., Fievet, G., Helmstetter, N., King, M., Knapp, S. J., Lai, Z., Le Paslier, M.-C., Lippi, Y., Lorenzon, L., Mandel, J. R., Marage, G., Marchand, G., Marquand, E., Bret Mestries, E., Morien, E., Nambeesan, S., Nguyen, T., Pegot - Espagnet, P., Pouilly, N., Raftis, F., Sallet, E., Schiex, T., Thomas, J., Vandecasteele, C., Vares, D., Vear, F., Vautrin, S., Crespi, M., Mangin, B., Burke, JM., Salse, J., Munos, S., Vincourt, P., Rieseberg, L. H., Langlade, N. (2017). The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature, 546 (7656), 148-152. , DOI : 10.1038/nature22380
  • Lefebvre, B. (2017). Arbuscular mycorrhiza: A new role for N-acetylglucosamine. Nature Plants, 3 (6). , DOI : 10.1038/nplants.2017.85
  • Mayjonade, B., Gouzy, J., Donnadieu, C., Pouilly, N., Marande, W., Callot, C., Langlade, N., Munos, S. (2017). Protocol For: Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules. BioTechniques, 62 (1). , DOI : 10.2144/000114503
  • Duhnen, A., Gras, A., Teyssèdre , S., Romestant, M., Claustres, B., Dayde, J., Mangin, B. (2017). Genomic Selection for Yield and Seed Protein Content in Soybean: A Study of Breeding Program Data and Assessment of Prediction Accuracy. Crop Science, 57 (3), 1325-1337. , DOI : 10.2135/cropsci2016.06.0496
  • Duhoux, A., Carrere, S., Duhoux, A., Délye, C. (2017). Transcriptional markers enable identification of rye-grass (Lolium sp.) plants with non-target -site-based resistance to herbicides inhibiting acetolactate-synthase. Plant Science, 257, 22-36. , DOI : 10.1016/j.plantsci.2017.01.009
  • Daubech, B., Remigi, P., Doin De Moura, G. G., Marchetti, M., Pouzet, C., Auriac, M.-C., Gokhale, C. S., Masson-Boivin, C., Capela, D. (2017). Spatio-temporal control of mutualism in legumes helps spread symbiotic nitrogen fixation. eLife , 6. , DOI : 10.7554/eLife.28683
  • Liu, Y., Tang, Y., Qin, X., Yang, L., Jiang, G., Li, S., Ding, W. (2017). Genome Sequencing of Ralstonia solanacearum CQPS-1, a Phylotype I Strain Collected from a Highland Area with Continuous Cropping of Tobacco. Frontiers in Microbiology, 8. , DOI : 10.3389/fmicb.2017.00974
  • Petriacq, P., de Bont, L., Genestout, L., Hao, J. F., Laureau, C., Florez-Sarasa, I., Rzigui, T., Queval, G., Gilard, F., Mauve, c., Guerard, F., Sibold, M., Marion, J., Fresneau, C., Brown, S., Danon, A., Krieger-Liszkay, A., Berthomé, R., Ribas-Carbo, M., Tcherkez, G., Cornic, G., Pineau, B., Gakière, B., De Paepe, R. (2017). Photoperiod Affects the Phenotype of Mitochondrial Complex I Mutants. Plant Physiology, 173 (1), 434-455. , DOI : 10.1104/pp.16.01484
  • Carrere, S., Gouzy, J. (2017). myGenomeBrowser: building and sharing your own genome browser. Bioinformatics, 33 (8), 1255-1257. , DOI : 10.1093/bioinformatics/btw800
  • Laniau, J., Frioux, C., Nicolas, J., Baroukh, C., Cortes, M.-P., Got, J., Trottier, C., Eveillard, D., Siegel, A. (2017). Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks. PeerJ, 5. , DOI : 10.7717/peerj.3860
  • Bordat, A., Marchand, G., Langlade, N., Pouilly, N., Munos, S., Dechamp-Guillaume, G., Vincourt, P., Bret-Mestries, E. (2017). Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening. BMC Plant Biology, 17 (1), 167-167. , DOI : 10.1186/s12870-017-1116-1
  • Badouin, H., Gladieux, P., Gouzy, J., Siguenza, S., Aguileta, G., Snirc, A., Le Prieur, S., Jeziorski, C., Branca, A., Giraud, T. (2017). Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Molecular Ecology, 26 (7). , DOI : 10.1111/mec.13976
  • Blanc-Mathieu, R., Perfus-Barbeoch, L., Aury, J.-M., Da Rocha, M., Gouzy, J., Sallet, E., Martin Jimenez, C., Bailly-Bechet, M., Castagnone-Sereno, P., Flot, J.-F., kozlowski, D., Cazareth, J., Couloux, A., Da Silva, C., Guy, Kim-Jo, Y. J., Rancurel, C., Schiex, T., Abad, P., Wincker, P., Danchin, E. (2017). Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. Plos Genetics, 13 (6), e1006777. , DOI : 10.1371/journal.pgen.1006777
  • Werner Ribeiro, C., Baldacci-Cresp, F., Abad, P., Larousse, M., Benyamina, S. M., Lambert, A., Hopkins, J., Castella, C., Cazareth, J., Alloing, G., Boncompagni, É., Couturier, J., Mergaert, P., Gamas, P., Rouhier, N., Montrichard, F., Frendo, P. (2017). Regulation of Differentiation of Nitrogen-Fixing Bacteria by Microsymbiont Targeting of Plant Thioredoxin s1. Current Biology, 27 (2), 250-256. , DOI : 10.1016/j.cub.2016.11.013
  • Mouammine, A., Pages, S., Lanois Nouri, A., Gaudriault, S., Jubelin, G., Bonabaud, M., Cruveiller, S., Dubois, E., Roche, Legrand, L., Brillard, J., Givaudan, A. (2017). An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence. Scientific Reports, 7, 43670. , DOI : 10.1038/srep43670

2016

  • Alunni, B., Gourion, B. (2016). Terminal bacteroid differentiation in the legume-rhizobium symbiosis: nodule-specific cysteine-rich peptides and beyond. New Phytologist, 211 (2), 411-7. , DOI : 10.1111/nph.14025
  • Lonjon, F., turner, M., Henry, C., Rengel, D., Lohou, D., van de Kerkhove, Q., Cazalé, A.-C., Peeters, N., Genin, S., Vailleau, F.   (2016). Comparative Secretome Analysis of Ralstonia solanacearum Type 3 Secretion-Associated Mutants Reveals a Fine Control of Effector Delivery, Essential for Bacterial Pathogenicity. Molecular and Cellular Proteomics, 15, 598-616.
  • Gascuel, Q., Buendia Martin, L. F., Pecrix, Y., BLANCHET, N., Munos, S., Vear, F., Godiard, L. (2016). RXLR and CRN Effectors from the Sunflower Downy Mildew Pathogen Plasmopara halstedii Induce Hypersensitive-Like Responses in Resistant Sunflower Lines. Frontiers in Plant Science, 7, 15 p. , DOI : 10.3389/fpls.2016.01887
  • Robène, I., Bolot, S., Pruvost, O., Arlat, M , Noël , L , Carrere, S., Jacques, M. A., Koebnik, R., Gagnevin, L. (2016). High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants. Genome Announcements, 4 (5), e00902-16. , DOI : 10.1128/genomeA.00902-16
  • Hanemian, M., Barlet, X., Sorin, C., Yadeta, K. A., Keller, H., Favery, B., Simon, R., Thomma, B. ,. J., Hartmann, C., Crespi, M., Marco, Y., Tremousaygue, D., Deslandes, L. (2016). Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. New Phytologist. , DOI : 10.1111/nph.13913
  • Wang, K., Remigi, P., Anisimova, M., lonjon, F., Kars, I., Kajava, A., Li, C.-H., Cheng, C.-P., Vailleau, F., Genin, S., Peeters, N.   (2016). Functional assignment to positively selected sites in the core type III effector RipG7 from Ralstonia solanacearum. Molecular Plant Pathology, 17 (4), 553-564. , DOI : 10.1111/mpp.12302
  • Mbengue, M., Navaud, O., Peyraud, R., Barascud, M., Badet, T., Vincent, R., Barbacci, A., Raffaele, S.   (2016). Emerging trends in molecular interactions between plants and the broad host range fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum. Frontiers in Plant Science, 7. , DOI : 10.3389/fpls.2016.00422
  • Dumas, A.-S., Soubigou-Taconnat, L., Barbas, E., Rigaill, G., Catrice, O., Bernard, D., Benamar, A., Macherel, D., El Amrani, A., Berthomé, R.   (2016). Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure. BMC Genomics, 17, 1-23. , DOI : 10.1186/s12864-016-3133-0
  • Buendia Martin, L. F., Wang, T., Girardin, A., Lefebvre, B.   (2016). The LysM receptor-like kinase SlLYK10 regulates the arbuscular mycorrhizal symbiosis in tomato. New Phytologist, 210 (1), 184-195. , DOI : 10.1111/nph.13753
  • Serrano Valdivia, I. M., Audran, C., Rivas, S. (2016). Chloroplasts at work during plant innate immunity. Journal of Experimental Botany, 67 (13), 3845-54. , DOI : 10.1093/jxb/erw088
  • Cerri, M., Frances, L., Kelner, A., Fournier, J., Middleton, P. H., Auriac, M.-C., Mysore, K. S., Wen, J., Erard, M., Barker, D., Oldroyd, G. E., de Carvalho-Niebel, F. (2016). The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection. Plant Physiology, 171 (2), 1037-1054. , DOI : 10.1104/pp.16.00230
  • Mayjonade, B., Gouzy, J., Donnadieu, C., Pouilly, N., Marande, W., Callot, C., Langlade, N., Munos, S. (2016). Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules. BioTechniques, 61 (4), 203-205. , DOI : 10.2144/000114460
  • Peyraud, R., Cottret, L., Marmiesse, L., Gouzy, J., Genin, S. (2016). A resource allocation trade-off between virulence and proliferation drives metabolic versatility in the plant pathogen Ralstonia solanacearum. Plos Pathogens, 12 (10), 1-25. , DOI : 10.1371/journal.ppat.1005939
  • Boulanger, A., Noël, L. (2016). Xanthomonas whole genome sequencing: phylogenetics, host specificity and beyond. Frontiers in Microbiology, 7, 2 p. , DOI : 10.3389/fmicb.2016.01100
  • Jardinaud, M.-F., Boivin, S., Rodde, N., Catrice, O., Kisiala, A., Lepage, A., Moreau, S., Roux, B., Cottret, L., Sallet, E., Brault, M., Emery, R., Gouzy, J., Frugier, F., Gamas, P. (2016). A laser dissection-RNAseq analysis highlights the activation of cytokinin pathways by nod factors in the Medicago truncatula root epidermis. Plant Physiology, 171 (3), 2256-2276. , DOI : 10.1104/pp.16.00711
  • Aguileta, G., Badouin, H., Hood, M. E., Møller, A. P., Le Prieur, S., Snirc, A., Siguenza, S., Mousseau, T. A., Shykoff, J. A., Cuomo, C. A., Giraud, T. (2016). Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl. Molecular Ecology, 25 (14), 3370-83. , DOI : 10.1111/mec.13675
  • Kitaeva, A. B., Demchenko, K. N., Tikhonovich, I. A., Timmers, A. C., Tsyganov, V. E.   (2016). Comparative analysis of the tubulin cytoskeleton organization in nodules of Medicago truncatula and Pisum sativum: bacterial release and bacteroid positioning correlate with characteristic microtubule rearrangements. New Phytologist, 210 (1), 168-183. , DOI : 10.1111/nph.13792
  • Fonouni Farde, C., Tan, S., Baudin, M., Brault, M., Wen, J., Mysore, K. S., Niebel, A., Frugier, F., Diet, A. (2016). Della-mediated gibberellin signalling regulates Nod factor signalling and rhizobial infection. Nature Communications, 7, 12636. , DOI : 10.1038/ncomms12636
  • Fujiwara, S.  , Kawazoe, T., Ohnishi, K., Kitagawa, T., Popa, C., Valls, M., Genin, S., Nakamura, K., Kuramitsu, Y., Tanaka, N., Tabuchi, M. (2016). Ripay, a plant pathogen effector protein, exhibits robust -glutamyl cyclotransferase activity when stimulated by eukaryotic thioredoxins. Journal of Biological Chemistry, 291 (13), 6813-6830. , DOI : 10.1074/jbc.M115.678953
  • Timmers, T. (2016). Light microscopy of whole plant organs. Journal of Microscopy, 263 (2), 165-170. , DOI : 10.1111/jmi.12394
  • Boivin, S., Kazmierczak, T., Brault, M., Wen, J., Gamas, P., Mysore, K. S., Frugier, F. (2016). Different cytokinin histidine kinase receptors regulate nodule initiation as well as later nodule developmental stages in Medicago truncatula. Plant, Cell and Environment, 39 (10), 2198-2209. , DOI : 10.1111/pce.12779
  • Cruaud, A., Gautier, M., Rossi, J.-P., Rasplus, J. Y., Gouzy, J. (2016). Radis: analysis of RAD-seq data for interspecific phylogeny. Bioinformatics, 32 (19), 3027-3028. , DOI : 10.1093/bioinformatics/btw352
  • Fortuna, T. M., Snirc, A., Badouin, H., Gouzy, J., Siguenza, S., Esquerre, D., Le Prieur, S., Shykoff, J. A., Giraud, T. (2016). Polymorphic microsatellite markers for the tetrapolar anther-smut fungus Microbotryum saponariae based on genome sequencing. Plos One, 11 (11), 13 p. , DOI : 10.1371/journal.pone.0165656
  • Aguiar-Schwanck, A., Savary, S., Debaeke, P., Vincourt, P., Willocquet, L. (2016). Effects of plant morphological traits on phoma black stem in sunflower. European Journal of Plant Pathology, 145 (2), 345-361. , DOI : 10.1007/s10658-015-0848-8
  • Louarn, J., Boniface, M.-C., Pouilly, N., Velasco, L., Perez-Vich, B., Vincourt, P., Munos, S. (2016). Sunflower resistance to broomrape (Orobanche cumana) is controlled by specific QTLs for different parasitism stages. Frontiers in Plant Science, 7. , DOI : 10.3389/fpls.2015.00590
  • Guidot, A., Rengel, D., Gouzy, J., Peeters, N., Perrier, A., Peyraud, R., Genin, S.  , Barlet, X. (2016). Enhanced in planta fitness through adaptive mutations in EfpR, a dual regulator of virulence and metabolic functions in the plant pathogen Ralstonia solanacearum. Plos Pathogens, 23 p. , DOI : 10.137 1/journ al.ppat.1006044
  • Chaintreuil, C., Rivallan, R., Bertioli, D. J., Klopp, C., Gouzy, J., Courtois, B., Leleux, P., Martin, G., Rami, J.-F., Gully, D., Parrinello, H., Severac, D., Patrel, D., Fardoux, J., Ribiere, W., Boursot, M., Cartieaux, F., Czernic, P., Ratet, P., Mournet, P., Giraud, E., Arrighi, J.-F. (2016). A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. DNA Research, 23 (4), 365 - 376. , DOI : 10.1093/dnares/dsw020
  • Reboud, X., Sicard, D., Bataillon, T., Bedhomme, S., Dillmann, C., Gaba, S., Gallet, R., Guidot, A., Goldringer, I., Jasmin, J.-N., Kaltz, O., Méry, F., Nidelet, T., Schneider, D., Spor, A. (2016). Evolution expérimentale. In: Thomas F., Raymond M., Lefevre T., Biologie évolutive (p. 755-790). De Boeck Supérieur Sciences (DBS Sciences). 1000 p.
  • Roux, F., Bergelson, J. (2016). The Genetics Underlying Natural Variation in the Biotic Interactions of Arabidopsis thaliana: The Challenges of Linking Evolutionary Genetics and Community Ecology. In: Orgogozo, V, dir., Gene and Evolution (p. 111-156). Current Topics in Developmental Biology, 119. SAN DIEGO, USA : ELSEVIER ACADEMIC PRESS INC. 401 p., DOI : 10.1016/bs.ctdb.2016.03.001
  • Lebrigand, K., He, L. D., Thakur, N., Arguel, M.-J., Polanowska, J., Henrissat, B., Record, E., Magdelenat, G., Barbe, V., Raffaele, S., Barbry, P., Ewbank, J. J.   (2016). Comparative genomic analysis of drechmeria coniospora reveals core and specific genetic requirements for fungal endoparasitism of nematodes. Plos Genetics, 12 (5). , DOI : 10.1371/journal.pgen.1006017
  • Ling, J., Wang, Wu, Li, Tang, Naseer, N., Zheng, Masson-Boivin, C., Zhong, Z., Zhu, J. (2016). Plant nodulation inducers enhance horizontal gene transfer of Azorhizobium caulinodans symbiosis island. Proceedings of the National Academy of Sciences of the United States of America, 113 (48), 13875-13880. , DOI : 10.1073/pnas.1615121113
  • Lamichhane, J. R., Bartoli, C., Varvaro, L. (2016). Extensive field survey, laboratory and greenhouse studies reveal complex nature of Pseudomonas Syringae-Associated hazelnut decline in central italy. Plos One, 11 (2), 1-15. , DOI : 10.1371/journal.pone.0147584
  • Gascuel, Q., Bordat, A., Sallet, E., Pouilly, N., Carrere, S., Roux, F., Vincourt, P., Godiard, L. (2016). Effector polymorphisms of the sunflower downy mildew pathogen Plasmopara Halstedii and their use to identify pathotypes from field isolates. Plos One, 11 (2), 1-19. , DOI : 10.1371/journal.pone.0148513
  • Satge, C., Moreau, S., Sallet, E., Lefort, G., Auriac, M.-C., Rembliere, C., Cottret, L., Gallardo, K., Noirot, C., Jardinaud, M.-F., Gamas, P. (2016). Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula. Nature Plants, 2, 16166. , DOI : 10.1038/nplants.2016.166
  • Tang, X., Placella, S., Daydé, F., Bernard, L., Robin, A., Journet, E.-P., Justes, E., Hinsinger, P. (2016). Phosphorus availability and microbial community in the rhizosphere of intercropped cereal and legume along a P-fertilizer gradient. Plant and Soil, 407 (1/2), 119-134. , DOI : 10.1007/s11104-016-2949-3
  • Rabier, C.-E., Barre, P., Asp, T., Charmet, G., Mangin, B. (2016). On the accuracy of genomic selection. Plos One, 11 (6), 1-23. , DOI : 10.1371/journal.pone.0156086
  • Jacques, M. A., Arlat, M., Boulanger, A., Boureau, T., Carrere, S., Cesbron, S., Chen, N. W., Cociancich, S., Darrasse, A., Denance, N., Fischer-Le Saux, M., Gagnevin, L., Koebnik, R., Lauber, E., NOEL, L., Pieretti, I., Portier, P., Pruvost, O., Rieux, A., Robène, I., Royer, M., Szurek, B., Verdier, V., Vernière, C. (2016). Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas: French Network on Xanthomonads (FNX). Annual Review of Phytopathology, 54 (1), 163-187. , DOI : 10.1146/annurev-phyto-080615-100147
  • Abd-El-Haliem, A. M., Vossen, J. H., van Zeijl, A., Dezhsetan, S., Testerink, C., Seidl, M. F., Beck, M., Strutt, J., Robatzek, S., Joosten, M.   (2016). Biochemical characterization of the tomato phosphatidylinositol-specific phospholipase C (PI-PLC) family and its role in plant immunity. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1861 (9), 1365-1378. , DOI : 10.1016/j.bbalip.2016.01.017
  • Cunty, A., Cesbron, S., Briand, M., Carrere, S., Poliakoff, F., Jacques, M. A., Manceau, C. (2016). Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France. Brazilian Journal of Microbiology, 47 (3), 529-530.  DOI : 10.1016/j.bjm.2016.04.023
  • Mestre Artigues, P.-F., Carrere, S., Gouzy, J., Piron, M.-C., Tourvieille De Labrouhe, D., Vincourt, P., Delmotte, F., Godiard, L. (2016). Comparative analysis of expressed CRN and RXLR effectors from two Plasmopara species causing grapevine and sunflower downy mildew. Plant Pathology, 65 (5), 767-781. , DOI : 10.1111/ppa.12469
  • Andrianasolo, F. N., Casadebaig, P., Langlade, N., Debaeke, P., Maury, P. (2016). Effects of plant growth stage and leaf aging on the response of transpiration and photosynthesis to water deficit in sunflower. Functional Plant Biology, 43 (8), 797-805. , DOI : 10.1071/FP15235
  • Vernie, T., Camut, S., Camps, C., Rembliere, C., de Carvalho-Niebel, F., Mbengue, M., Timmers, T., Gasciolli, V., Thompson, R., Le Signor, C., Lefebvre, B., Cullimore, J., Hervé, C. (2016). PUB1 Interacts with the Receptor Kinase DMI2 and Negatively Regulates Rhizobial and Arbuscular Mycorrhizal Symbioses through Its Ubiquitination Activity in Medicago truncatula. Plant Physiology, 170 (4), 2312-2324. , DOI : 10.1104/pp.15.01694
  • Nicolas, S., Peros, J.-P., Lacombe, T., Launay, A., Le Paslier, M.-C., Berard, A., Mangin, B., Valiere, S., Martins, F., Le Cunff, L., Laucou, V., Bacilieri, R., Dereeper, A., Chatelet, P., This, D., Doligez, A.   (2016). Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biology, 16 (1). , DOI : 10.1186/s12870-016-0754-z
  • Poinsot, V.  , Crook, M. B.  , Erdn, S., Maillet, F.  , Bascaules, A.  , Ané, J.-M.   (2016). New insights into Nod factor biosynthesis: Analyses of chitooligomers and lipo-chitooligomers of Rhizobium sp IRBG74 mutants. Carbohydrate Research, 434, 83-93. , DOI : 10.1016/j.carres.2016.08.001
  • Masson Boivin, C. (2016). Small is Plentiful. Trends in Plant Science, 21 (3), 173-175. , DOI : 10.1016/j.tplants.2016.01.010
  • Serrano, I., buscaill, P., Audran, C., Pouzet, C., Jauneau, A., Rivas, S. (2016). A non canonical subtilase attenuates the transcriptional activation of defence responses in Arabidopsis thaliana. eLife , 5, 1-24. , DOI : 10.7554/eLife.19755
  • Mestries, E., Auclert, B., Poisson-Bammé, B., Penaud, A., Grimault, V., Perrot, S., Robert, A., Roche, S., Serre, F., Tourvieille De Labrouhe, D., Vear, F., Boniface, M.-C., Bordat, A., Pouilly, N., Vincourt, P., Munos, S. (2016). Mesurer le niveau de résistance quantitative des variétés de tournesol face au mildiou dans les processus de sélection et d’évaluation variétale : un enjeu fort pour la gestion durable du risque . Innovations Agronomiques, 50, 131-144.
  • Accarias, S., Genthon, C., Rengel, D., Boullier, S., Foucras, G., Tabouret, G. (2016). Single-cell analysis reveals new subset markers of murine peritoneal macrophages and highlights macrophage dynamics upon Staphylococcus aureus peritonitis. Innate Immunity, 22 (5), 382-392. , DOI : 10.1177/1753425916651330
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  • Debieu, M., Chauveau, C., Genissel, A., Roux,F., Roby, D. (2016). Quantitative disease resistance to the bacterial pathogenXanthomonas campestrisinvolves an Arabidopsis immune receptor pair and a gene of unknown function. Molecular Plant Pathology, 17 (4), 510–520. , DOI : 10.1111/mpp.12298
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  • Hichri, I., Boscari, A., Meilhoc, E., Catalá, M., Barreno, E., Bruand, C., Lanfranco, L., Brouquisse, R.   (2016). Nitric oxide: a multitask player in plant–microorganism symbioses. In: Lorenzo Lamattina, Carlos García-Mata , dir., Gasotransmitters in Plants. The Rise of a New Paradigm in Cell Signaling (p. 239-268). Signaling and Communication in Plants (Chapter 12). Cham, CHE : Springer International Publishing AG. 335 p., DOI : 10.1007/978-3-319-40713-5_12
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  • Bartoli, C., Roux, F., Lamichhane, J. R. (2016). Molecular mechanisms underlying the emergence of bacterial pathogens: an ecological perspective. Molecular Plant Pathology, 17 (1), 303-310. , DOI : 10.1111/mpp.12284
  • Rey, T., Laporte, P., Bonhomme, Jardinaud, M.-F., Huguet, S., Balzergue, S., Dumas, Niebel, A., Jacquet, C. (2016). MtNF-YA1, a central transcriptional regulator of symbiotic nodule development, is also a determinant of Medicago truncatula susceptibility toward a root pathogen. Frontiers in Plant Science, 7, 14 p. , DOI : 10.3389/fpls.2016.01837
  • Schwanck, A. A., Savary, S., Lepennetier, A., Debaeke, P., Vincourt, P., Willocquet, L. (2016). Predicting quantitative host plant resistance against phoma black stem in sunflower. Plant Pathology, 65 (8), 1366-1379. , DOI : 10.1111/ppa.12512
  • Chabaud, M., Gherbi, H., Pirolles, E., Vaissayre, V., Fournier, J., Moukouanga, D., Franche, C., Bogusz, D., Tisa, L. S., Barker, D., Svistoonoff, S. (2016). Chitinase-resistant hydrophilic symbiotic factors secreted by Frankia activate both Ca(2+) spiking and NIN gene expression in the actinorhizal plant Casuarina glauca. New Phytologist, 209 (1), 86-93. , DOI : 10.1111/nph.13732
  • de Marchi, R., Sorel, M., Mooney, B., Fudal, I., Goslin, K., Kwasniewska, K., Ryan, P. T., Pfalz, M., Kroymann, J., Pollmann, S., Feechan, A., Wellmer, F., Rivas, S., Graciet, E. (2016). The N-end rule pathway regulates pathogen responses in plants. Scientific Reports, 6. , DOI : 10.1038/srep26020
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2015

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  • Gascuel, Q., Martinez, Y., Boniface, M.-C., Vear, F., Pichon, M., Godiard, L.   (2015). The sunflower downy mildew pathogen Plasmopara halstedii. Molecular Plant Pathology, 16 (2), 109-122. , DOI : 10.1111/mpp.12164
  • Vernie, T., Kim, J., Frances, L., Ding, Y., Sun, J., Guan, D., Niebel, A., Gifford, M. L., de Carvalho-Niebel, F., Oldroyd, G. E. D. (2015). The NIN Transcription Factor Coordinates Diverse Nodulation Programs in Different Tissues of the Medicago truncatula Root. Plant Cell, 27 (12), 3410-3424. , DOI : 10.1105/tpc.15.00461
  • Venkateshwaran, M.  , Jayaraman, D., Chabaud, M., Genre, A., Balloon, A. J., Maeda, J., Forshey, K., den Os, D., Kwiecien, N. W., Coon, J. J., Barker, D. G., Ané, J.-M. (2015). A role for the mevalonate pathway in early plant symbiotic signaling. Proceedings of the National Academy of Sciences of the United States of America, 112 (31), 9781-9786. , DOI : 10.1073/pnas.1413762112
  • Bensmihen, S. (2015). Hormonal Control of Lateral Root and Nodule Development in Legumes. Plants, 4 (3), 523-547.
  • Hautekèete, N.-C.  , Frachon, L., Luczak, C., Toussaint, B., van Landuyt, W., van Rossum, F., Piquot, Y. (2015). Habitat type shapes long-term plant biodiversity budgets in two densely populated regions in north-western Europe. Diversity and Distributions, 21 (6), 631-642. , DOI : 10.1111/ddi.12287
  • Badouin, H., Hood, M. E., Gouzy, J., Aguileta, G., Siguenza, S., Perlin, M. H., Cuomo, C. A., Fairhead, C., Branca, A., Giraud, T. (2015). Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus Microbotryum lychnidis-dioicae. Genetics, 200 (4), 1275-1284. , DOI : 10.1534/genetics.115.177709
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  • Mangin, B., Sandron, F., Henry, K., Devaux, B., Willems, G., Devaux, P., Goudemand, E. (2015). Breeding patterns and cultivated beets origins by genetic diversity and linkage disequilibrium analyses. Theoretical and Applied Genetics, 128 (11), 2255 - 2271. , DOI : 10.1007/s00122-015-2582-1
  • Fournier, J., Teillet, A., Chabaud, M., Ivanov, S., Genre, A., Limpens, E., de Carvalho-Niebel, F., Barker, D. G. (2015). Remodeling of the infection chamber before infection thread formation reveals a two-step mechanism for rhizobial entry into the host legume root hair. Plant Physiology, 167 (4), 1233-1242. , DOI : 10.1104/pp.114.253302
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  • Laffont, C., Rey, T., André, O., Novero, M., Kazmierczak, T., Debellé, F., Bonfante, P., Jacquet, C., Frugier, F. (2015). The CRE1 Cytokinin Pathway Is Differentially Recruited Depending on Medicago truncatula Root Environments and Negatively Regulates Resistance to a Pathogen. Plos One, 10 (1). , DOI : 10.1371/journal.pone.0116819
  • Ray, S. K., Kumar, R., Peeters, N., Boucher, C., Genin, S. (2015). rpoN1, but not rpoN2, is required for twitching motility, natural competence, growth on nitrate, and virulence of Ralstonia solanacearum. Frontiers in Microbiology, 6. , DOI : 10.3389/fmicb.2015.00229
  • Bartoli, C., Carrere, S., Lamichhane, J. R., Varvaro, L., Morris, C. E. (2015). Whole-genome sequencing of 10 Pseudomonas syringae strains representing different host range spectra. Genome Announcements, 3 (2), e00379-15. , DOI : 10.1128/genomeA.00379-15
  • Sonntag, F., Kroner, C., Lubuta, P., Peyraud, R., Horst, A., Buchhaupt, M., Schrader, J. (2015). Engineering Methylobacterium extorquens for de novo synthesis of the sesquiterpenoid alpha-humulene from methanol. Metabolic Engineering, 32, 82-94. , DOI : 10.1016/j.ymben.2015.09.004
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  • Gaba, S., Lescourret, F., Boudsocq, S., Enjalbert, J., Hinsinger, P., Journet, E.-P., Navas, M.-L., Wéry, J., Louarn, G., Malézieux, E., Pelzer, E., Prudent, M., Ozier-Lafontaine, H. (2015). Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design. Agronomy for Sustainable Development, 35 (2), 607-623. , DOI : 10.1007/s13593-014-0272-z
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  • Sauviac, L., Bastiat, B., Bruand, C. (2015). The general stress response in alpha-rhizobia. In: Frans de Bruijn, dir., Biological Nitrogen Fixation. Hoboken, USA : Wiley-Blackwell.
  • Duhoux, A., Carrère, S., Gouzy, J., Bonin, L., Délye, C. (2015). RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance. Plant Molecular Biology, 87 (4-5), 473-487. , DOI : 10.1007/s11103-015-0292-3
  • Lamichhane, J. R., Bartoli, C. (2015). Plant pathogenic bacteria in open irrigation systems: what risk for crop health?. Plant Pathology, 64 (4), 757-766. DOI : 10.1111/ppa.12371
  • El-Maarouf-Bouteau, H., Sajjad, Y., Bazin, J., Langlade, N., Cristescu, S. M., Balzergue, S., Baudouin, E., Bailly, C. (2015). Reactive oxygen species, abscisic acid and ethylene interact to regulate sunflower seed germination. Plant, Cell and Environment, 38 (2), 364 - 374 DOI : 10.1111/pce.12371
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  • Gardin, J. A. C., Gouzy, J., Carrère, S., Délye, C. (2015). ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass). BMC Genomics, 16. , DOI : 10.1186/s12864-015-1804-x
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  • Fort, F., Cruz, P., Catrice, O., Delbrut, A., Luzarreta, M., Stroia, C., Jouany, C. (2015). Root functional trait syndromes and plasticity drive the ability of grassland Fabaceae to tolerate water and phosphorus shortage. Environmental and Experimental Botany, 110, 62-72. , DOI : 10.1016/j.envexpbot.2014.09.007
  • Alves Carvalho, S., Aubert, G.  , Carrère, S., Cruaud, C., Brochot, A.-L., Jacquin, F., Klein, A., Martin, C., Boucherot, K., Kreplak, J., da Silva, C., Moreau, S., Gamas, P., Wincker, P., Gouzy, J., Burstin, J.   (2015). Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. Plant Journal, 84 (1), 1-19. , DOI : 10.1111/tpj.12967
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  • Pieretti, I., Cociancich, S., Bolot, S., Carrère, S., Morisset, A., Rott, P., Royer, M. (2015). Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans. Genes, 6 (3), 714-733. DOI : 10.3390/genes6030714
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  • Bedoussac, L., Journet, E.-P., Hauggaard-Nielsen, H., Naudin, C., Corre-Hellou, G., Jensen, E. S., Prieur, L., Justes, E. (2015). Ecological principles underlying the increase of productivity achieved by cereal-grain legume intercrops in organic farming. A review. Agronomy for Sustainable Development, 35 (3), 911-935.  DOI : 10.1007/s13593-014-0277-7
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