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Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions

Publications - Sunflower Genetics and Genomics


  • Duhnen, A., Gras, A., Teyssèdre, S., Romestant, M., Claustres, B., Daydé, J., Mangin, B. (2017) Genomic selection for yield and seed protein content in soybean: study of breeding program data and assessment of prediction accuracy. Crop Science (in press).
  • Mangin, B., Casadebaig, P., Cadic, E., Blanchet, N., Boniface, M.C., Carrère, S., Gouzy, J., Legrand, L., Mayjonade, B., Pouilly, N., André, T., Coque, M., Piquemal, J., Romestant, M., Vincourt, P., Muños, S., Langlade, N.B. (2017) Genetic control of oil yield plasticity to combined abiotic stresses using a joint approach of crop modeling and genome-wide association. Plant, Cell & Environment (in press).
  • Mangin, B., Pouilly, N., Boniface, M.C., Langlade, N.B., Vincourt, P., Vear, F., Muños, S. (2017) Molecular diversity in sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits. Theoretical and Applied Genetics 2017 Mar 2. doi: 10.1007/s00122-017-2872-x.
  • Debaeke P, Casadebaig P, Flénet F, Langlade NB (2016) Sunflower crop and climate change: vulnerability, adaptation, and mitigation potential from case-studies in Europe. OCL 24(1)


  • Fernandez, O., Urrutia, M., Bernillon, S., Giauffret, C., Tardieu, F., Le Gouis, J., Langlade, N., Charcosset, A., Moing, A., Gibon, Y. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics 12: 158
  • Gascuel, Q., Buendia, L., Pecrix, Y., Blanchet, N., Muños, S., Vear, F., Godiard, L. (2016) RXLR and CRN effectors from the sunflower downy mildew pathogen Plasmopara halstedii induce hypersensitive-like responses in resistant sunflower lines. Front Plant Sci. doi: 10.3389/fpls.2016.01887
  • Louarn, J., Boniface, M.C., Pouilly, N., Velasco, L., Pérez-Vich, B., Vincourt, P., Muños, S. (2016) Sunflower Resistance to Broomrape (Orobanche cumana) Is Controlled by Specific QTLs for Different Parasitism Stages. Front Plant Sci. doi: 10.3389/fpls.2016.00590
  • Mayjonade, B., Gouzy, J., Donnadieu, C., Pouilly, N., Marande, W., Callot, C., Langlade, N., Muños, S. (2016) Extraction of high-molecular-weight genomic DNA for the long-read sequencing of single molecules. BioTechniques 61: 203–205
  • Nicolas, S.D., Péros, J.P., Lacombe T., Launay, A., Le Paslier, M.C., Bérard, A., Mangin, B., Valière, S., Martins, F., Le Cunff, L., et al (2016) Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biology 16: 74
  • Rabier, C.E., Barre, P., Asp, T., Charmet, G., Mangin, B. (2016) On the Accuracy of Genomic Selection. PLOS ONE 11: e0156086
  • Andrianasolo, F.N., Casadebaig, P., Langlade, N., Debaeke, P., Maury, P. (2016) Effects of plant growth stage and leaf aging on the response of transpiration and photosynthesis to water deficit in sunflower. Functional Plant Biology 43(8) · June 2016
  • Khoufi, S., Pouilly, N., Muños, S., Bérard, A., Fayçal BJ, Vincourt, P., Brunel, D. (2016) Genetic Diversity and Core Collection Constitution for Subsequent Creation of New Sunflower Varieties in Tunisia. Helia. doi: 10.1515/helia-2016-0002
  • Gélard, W., Burger, P., Casadebaig, P., Langlade, N., Debaeke, P., Devy, M., Herbulot, A. (2016) 3D plant phenotyping in sunflower using architecture-based organ segmentation from 3D point clouds. 5th International Workshop on Image Analysis Methods for the Plant Sciences


  • Marchand, G., Huynh-Thu, V. A., Kane, N., Arribat, S., Varès, D., Rengel, D., Balzergue, S., Rieseberg, L., Vincourt, P., Geurts, P., Vignes, M. and Langlade, N. B. (2014) Bridging physiological and evolutionary time scales in a gene regulatory network.  New Phytologist 203(2):685-96. doi: 10.1111/nph.12818. Epub 2014 May 2


  • Marchand, G., Mayjonade, B., Varès,D., Blanchet, N., Boniface, M.C., Maury, P., Andrianasolo Nambinina F., Burger, P., Debaeke, P., Casadebaig, P., Vincourt, P., Langlade N.B. (2013) A biomarker based on gene expression indicates plant water status in controlled and natural environments. Plant Cell and Environment DOI:10.1111/pce.12127  
  • Cadic, E.,Coque, M., Vear, F., Grezes-Besset, B., Pauquet, J., Piquemal, J., Lippi, Y., Blanchard, P., Romestant, M., Pouilly, N., Rengel, D., Gouzy, J., Langlade, N., Mangin, B., Vincourt, P. (2013) Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.) Theor.Appl.Genet. DOI: 10.1007/s00122-013-2056-2


  • Rengel, D., Arribat, S., Pierre Maury, P., Martin-Magniette, M.L., Hourlier, T., Laporte, M., Varès, D., Carrère, C., Grieu, P., Balzergue, S., Gouzy, J., Vincourt, P., Langlade, N.B (2012) A Gene-Phenotype Network Based on Genetic Variability for Drought Responses Reveals Key Physiological Processes in Controlled and Natural Environments. PLoS ONE 7(10): e45249. doi:10.1371/journal.pone.0045249
  • Kane, N. C., Burke, J. M., Marek, L., Seiler, G., Vear, F., Baute, G., Knapp, S. J., Vincourt, P. and Rieseberg, L. H. (2012), Sunflower genetic, genomic and ecological resources. Molecular Ecology Resources. doi: 10.1111/1755-0998.12023
  • Merah, O., Langlade, N., Alignan, M., Roche, J., Pouilly, N., Lippi, Y., Vear, F., Cerny, M., Bouniols, A., Mouloungui, Z., Vincourt, P. (2012) Genetic analysis of phytosterol content in sunflower seeds. Theor.Appl.Genet. DOI: 10.1007/s00122-012-1937-0 
  • Vincourt, P., As Sadi, F., Bordat, A., Langlade, N., Gouzy, J., Pouilly, N., Lippi, Y., Serre, F., Godiard, L., Tourvieille de Labrouhe, D., Vear, F. (2012) Consensus mapping of major resistance genes and independent QTL for quantitative resistance to sunflower downy mildew Theor.Appl.Genet. DOI: 10.1007/s00122-012-1882-y  
  • Haddadi, P., Ebrahimi, A., Langlade, N.B., Yazdi-samadi, B., Berger, M., Calmon, A., Naghavi, M.R., Vincourt, P., Sarrafi, A. (2012) Genetic dissection of tocopherol and phytosterol in recombinant inbred lines of sunflower through quantitative trait locus analysis and the candidate gene approach. Molecular Breeding 29(3):


  • As-Sadi, F., Carrere, S., Gascuel, Q., Hourlier, T., Rengel, D., Le Paslier, M-C, Bordat, A., Boniface, M-C., Brunel, D., Gouzy, J., Godiard, L.*, Vincourt, P.* (2011). Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences. BMC Genomics 12:498.
  • Bazin, J., Langlade, N., Vincourt, P., Arribat, S., Balzergue, S., El-Maarouf-Bouteau, H., Bailly, C. (2011) Targeted mRNA Oxidation Regulates Sunflower Seed Dormancy Alleviation during Dry After-Ripening: PLANT CELL  23 (6) : 2196-2208  DOI: 10.1105/tpc.111.086694  
  • Kane, N.C., Gill, N., King, M.G., Bowers, J.E., Berges, H., Gouzy, J., Bachlava, E., Langlade, N.B., Lai, Z., Stewart, M., Vincourt, P., Knapp, S.J., Rieseberg, L.H. (2011) Progress towards a reference genome for sunflower. Botany 89: 429–437 


  • Haddadi, P., Yazdi-Samadi, B., Langlade, N.B., Naghavi, M.R., Berger, M., Kalantari,  A., Calmon, A., Maury, P., Vincourt, P., Sarrafi, A. (2010) Genetic control of protein, oil and fatty acids content under partial drought stress and late sowing conditions in sunflower (Helianthus annuus). African Journal of Biotechnology 9 (40) :6768-6782


  • Vear, F., Serre, F., Jouan-Dufournel, I.,Bert, P.F., Roche, S., Walser, P., de Labrouhe, D.T., Vincourt, P. (2008)  Inheritance of quantitative resistance to downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus L.)  EUPHYTICA  164 (2) : 561-570  DOI: 10.1007/s10681-008-9759-5