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Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions

Publications - Sunflower Genetics and Genomics


  • Bonnafous, F., Fievet, G., Blanchet N., Boniface, M.C., Carrère, S., Gouzy,J., Legrand, L., Marage G., Bret-Mestries, E., Munos, S.; Pouilly, N., Vincourt, P., Langlade, N., Mangin, B. (2017) Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids. Theoretical and Applied Genetics in press
  • Bordat, A., Marchand, G., Langlade, N., Pouilly, N., Munos, S., Dechamp-Guillaume, G., Vincourt, P., Bret-Mestries, E. (2017) Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening
    BMC Plant Biology, in press
  • Mangin B., Bonnafous F., Blanchet N., Boniface M.C., Bret-Mestries E., Carrère S., Cottret L., Legrand L., Marage G., Pegot-Espagnet P., Muños S., Pouilly N., Vear F., Vincourt P. and Langlade N. (2017) Genomic prediction of sunflower hybrids oil content. Front Plant Sci. 2017 Sep 21;8:1633. doi: 10.3389/fpls.2017.01633. eCollection 2017.
  • Duhnen, A., Gras, A., Teyssèdre, S., Romestant, M., Claustres, B., Daydé, J., Mangin, B. (2017) Genomic selection for yield and seed protein content in soybean: study of breeding program data and assessment of prediction accuracy. Crop Science Vol. 57 No. 3, p. 1325-1337 
  • Mangin, B., Casadebaig, P., Cadic, E., Blanchet, N., Boniface, M.C., Carrère, S., Gouzy, J., Legrand, L., Mayjonade, B., Pouilly, N., André, T., Coque, M., Piquemal, J., Romestant, M., Vincourt, P., Muños, S., Langlade, N.B. (2017) Genetic control of oil yield plasticity to combined abiotic stresses using a joint approach of crop modeling and genome-wide association. Plant, Cell & Environment Apr 18. doi: 10.1111/pce.12961.
  • Badouin H., Gouzy J., Grassa C.J., Murat F., Staton S.E., Cottret L., Lelandais-Brière C., Owens G.L., Carrère S., Mayjonade B., Legrand L., Gill N., Kane N.C., Bowers J.E., Hubner S., Bellec A., Bérard A., Bergès H., Blanchet N., Boniface M.C., Brunel D., Catrice O., Chaidir N., Claudel C., Donnadieu C., Faraut T., Fievet G., Helmstetter N., King M., Knapp S.J., Lai Z., Le Paslier M.C., Lippi Y., Lorenzon L., Mandel J.R., Marage G., Marchand G., Marquand E., Bret-Mestries E., Morien E., Nambeesan S., Nguyen T., Pegot-Espagnet P., Pouilly N., Raftis F., Sallet E., Schiex T., Thomas J., Vandecasteele C., Varès D., Vear F., Vautrin S., Crespi M., Mangin B., Burke J.M., Salse J., Muños S., Vincourt P., Rieseberg L.H., Langlade N.B. (2017) The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature 546:148-152.
  • Mangin, B., Pouilly, N., Boniface, M.C., Langlade, N.B., Vincourt, P., Vear, F., Muños, S. (2017) Molecular diversity in sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits. Theoretical and Applied Genetics 2017 Mar 2. doi: 10.1007/s00122-017-2872-x.
  • Debaeke P, Casadebaig P, Flénet F, Langlade NB (2016) Sunflower crop and climate change: vulnerability, adaptation, and mitigation potential from case-studies in Europe. OCL 24(1)


  • Fernandez, O., Urrutia, M., Bernillon, S., Giauffret, C., Tardieu, F., Le Gouis, J., Langlade, N., Charcosset, A., Moing, A., Gibon, Y. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics 12: 158
  • Gascuel, Q., Buendia, L., Pecrix, Y., Blanchet, N., Muños, S., Vear, F., Godiard, L. (2016) RXLR and CRN effectors from the sunflower downy mildew pathogen Plasmopara halstedii induce hypersensitive-like responses in resistant sunflower lines. Front Plant Sci. doi: 10.3389/fpls.2016.01887
  • Louarn, J., Boniface, M.C., Pouilly, N., Velasco, L., Pérez-Vich, B., Vincourt, P., Muños, S. (2016) Sunflower Resistance to Broomrape (Orobanche cumana) Is Controlled by Specific QTLs for Different Parasitism Stages. Front Plant Sci. doi: 10.3389/fpls.2016.00590
  • Mayjonade, B., Gouzy, J., Donnadieu, C., Pouilly, N., Marande, W., Callot, C., Langlade, N., Muños, S. (2016) Extraction of high-molecular-weight genomic DNA for the long-read sequencing of single molecules. BioTechniques 61: 203–205
  • Nicolas, S.D., Péros, J.P., Lacombe T., Launay, A., Le Paslier, M.C., Bérard, A., Mangin, B., Valière, S., Martins, F., Le Cunff, L., et al (2016) Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biology 16: 74
  • Rabier, C.E., Barre, P., Asp, T., Charmet, G., Mangin, B. (2016) On the Accuracy of Genomic Selection. PLOS ONE 11: e0156086
  • Andrianasolo, F.N., Casadebaig, P., Langlade, N., Debaeke, P., Maury, P. (2016) Effects of plant growth stage and leaf aging on the response of transpiration and photosynthesis to water deficit in sunflower. Functional Plant Biology 43(8) · June 2016
  • Khoufi, S., Pouilly, N., Muños, S., Bérard, A., Fayçal BJ, Vincourt, P., Brunel, D. (2016) Genetic Diversity and Core Collection Constitution for Subsequent Creation of New Sunflower Varieties in Tunisia. Helia. doi: 10.1515/helia-2016-0002
  • Gélard, W., Burger, P., Casadebaig, P., Langlade, N., Debaeke, P., Devy, M., Herbulot, A. (2016) 3D plant phenotyping in sunflower using architecture-based organ segmentation from 3D point clouds. 5th International Workshop on Image Analysis Methods for the Plant Sciences


  • Marchand, G., Huynh-Thu, V. A., Kane, N., Arribat, S., Varès, D., Rengel, D., Balzergue, S., Rieseberg, L., Vincourt, P., Geurts, P., Vignes, M. and Langlade, N. B. (2014) Bridging physiological and evolutionary time scales in a gene regulatory network.  New Phytologist 203(2):685-96. doi: 10.1111/nph.12818. Epub 2014 May 2


  • Marchand, G., Mayjonade, B., Varès,D., Blanchet, N., Boniface, M.C., Maury, P., Andrianasolo Nambinina F., Burger, P., Debaeke, P., Casadebaig, P., Vincourt, P., Langlade N.B. (2013) A biomarker based on gene expression indicates plant water status in controlled and natural environments. Plant Cell and Environment DOI:10.1111/pce.12127  
  • Cadic, E.,Coque, M., Vear, F., Grezes-Besset, B., Pauquet, J., Piquemal, J., Lippi, Y., Blanchard, P., Romestant, M., Pouilly, N., Rengel, D., Gouzy, J., Langlade, N., Mangin, B., Vincourt, P. (2013) Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.) Theor.Appl.Genet. DOI: 10.1007/s00122-013-2056-2


  • Rengel, D., Arribat, S., Pierre Maury, P., Martin-Magniette, M.L., Hourlier, T., Laporte, M., Varès, D., Carrère, C., Grieu, P., Balzergue, S., Gouzy, J., Vincourt, P., Langlade, N.B (2012) A Gene-Phenotype Network Based on Genetic Variability for Drought Responses Reveals Key Physiological Processes in Controlled and Natural Environments. PLoS ONE 7(10): e45249. doi:10.1371/journal.pone.0045249
  • Kane, N. C., Burke, J. M., Marek, L., Seiler, G., Vear, F., Baute, G., Knapp, S. J., Vincourt, P. and Rieseberg, L. H. (2012), Sunflower genetic, genomic and ecological resources. Molecular Ecology Resources. doi: 10.1111/1755-0998.12023
  • Merah, O., Langlade, N., Alignan, M., Roche, J., Pouilly, N., Lippi, Y., Vear, F., Cerny, M., Bouniols, A., Mouloungui, Z., Vincourt, P. (2012) Genetic analysis of phytosterol content in sunflower seeds. Theor.Appl.Genet. DOI: 10.1007/s00122-012-1937-0 
  • Vincourt, P., As Sadi, F., Bordat, A., Langlade, N., Gouzy, J., Pouilly, N., Lippi, Y., Serre, F., Godiard, L., Tourvieille de Labrouhe, D., Vear, F. (2012) Consensus mapping of major resistance genes and independent QTL for quantitative resistance to sunflower downy mildew Theor.Appl.Genet. DOI: 10.1007/s00122-012-1882-y  
  • Haddadi, P., Ebrahimi, A., Langlade, N.B., Yazdi-samadi, B., Berger, M., Calmon, A., Naghavi, M.R., Vincourt, P., Sarrafi, A. (2012) Genetic dissection of tocopherol and phytosterol in recombinant inbred lines of sunflower through quantitative trait locus analysis and the candidate gene approach. Molecular Breeding 29(3):


  • As-Sadi, F., Carrere, S., Gascuel, Q., Hourlier, T., Rengel, D., Le Paslier, M-C, Bordat, A., Boniface, M-C., Brunel, D., Gouzy, J., Godiard, L.*, Vincourt, P.* (2011). Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide p0-2-fr edcseypem>tequencin. < DOC Plnomics2012:4.12div>
  • BadozinJ., Langlade, N., Mancourt, P., As ibat, S., Pilzergue, S., GoEl-Maaughf-uniteau,., Blaaly, N.C.2011). ardit=" limRNA Oxate n beRulator ofnflower geSd prDmance.yliglevtion madung tiDrylifrne-Rening20: PLANT CELL 2033 (6Th:strong> 29(196-2208 NeI: 1strong> 11:111105/tpc111/.086694 
  • Kane, N. C, Grily,,., King MM.R., Breers J,.E., Hurger,s,., Gouzy JJ., Bonh. lavaE., Blnglade, N.B., YaLa Z., ViStewar M., Vincourt, P., Muapp, S. JJ Rieseberg, L., H.2011). aPgramesto wwardannecorent genese prr qunflower. < DOConcey/strong>2089: 429–4 

    • Asddadi, P., Ebzdi-saSadi, B., Benglade, N.B., Yaghavi, M.R., Virger, M., CaKant Cari, ., Bolmon, A., Naury, P., Mancourt, P., Sarrafi, A. (2012)0Genetic control of oiotein c,il med itfat andcs ointent inderliarasal frdught Reressesnd leae pasowg tintetives ma sunflower seelianthus annuus L)MoAfrindi Jrnal.p  oiBieinchnogy R209 (40Ge:6768-6782ii>

    • Asar, F., Cerre, F., GoJrnan-Dufrnal, D.I.,rge P., F Roche, J., GoWse J P., Ca Labrouhe, D., T Vincourt, P. (20120 · Inrolince to oiantitative resistance to suwny mildew MoEUPHYTICA 20164201Th:strong> 29561-570 NeI: 1strong> 11:1117/s0010681-20-9759-5ii>
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