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Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions

Publications - Ecological genomics of adaptation in plant communities

  • Karasov, T.L., J.M. Kniskern, L. Gao, B.J. DeYoung, J. Ding, U. Dubiella, R. Lastra, S. Nallu, F. Roux, R.W. Innes, L.G. Barrett, R.R. Hudson and J. Bergelson. 2014. The long-term maintenance of a resistance polymorphism through diffuse interactions. Nature 512: 436-440. 
    PubMed
  • Roux, F., L. Noel, S. Rivas and D. Roby. 2014. Atypical kinases: emerging signaling components of plant immunity. New Phytologist 203: 713-716 
    PubMed
  • Roux, F., D. Voisin, T. Badet, C. Balagué, X. Barlet, C. Huard-Chauveau, D. Roby and S. Raffaele. 2014. Resistance to phytopathogens e tutti quanti: placing Quantitative Disease Resistance on the map. Molecular Plant Pathology 15(5): 427 – 432. 
    PubMed
  • Brachi, B., N. Faure, J. Bergelson, J. Cuguen and F. Roux. Genome-wide association mapping of flowering time in Arabidopsis thaliana in nature: genetics for underlying components and reaction norms across two successive years. Acta Botanica Gallica – Botany Letters 160: 205-218. Special Issue ‘Quantitative genetics in natural populations’.
  • Huard-Chauveau, C., L. Perchepied, M. Debieu, S. Rivas, I. Kars, J. Bergelson, F. Roux and D. Roby. 2013. An atypical kinase under balancing selection confers broad-spectrum disease resistance in Arabidopsis. PLoS Genetics 9(9): e1003766.
    PubMed
  • Brachi, B., R. Villoutreix, N. Faure, N. Hautekèete, Y. Piquot, M. Pauwels, D. Roby, J. Cuguen, J. Bergelson and F. Roux. 2013. Investigation of the geographical scale of adaptive phenological variation and its underlying genetic bases in Arabidopsis thaliana. Molecular Ecology 22: 4222-4240.
    PubMed
  • Cosson, P., V. Schurdi-Levraud, H. Le Quang, O. Sicard, F. Roux, O. Le Gall, T. Candresse and F. Revers. 2012. The RTM resistance to potyviruses in Arabidopsis thaliana: natural variation of the RTM genes and evidence for the implication of additional genes. PLoS One 7(6): e39169
    PubMed
  • Brachi, B., C. Aimé, C. Glorieux, J. Cuguen and F. Roux. 2012. Adaptive value of phenological traits in stressful environments: predictions based on seed production and Laboratory Natural Selection. PLoS One 7(3):e32069.
    PubMed
  • Hancock, A.M., B. Brachi, N. Faure, M.W. Horton, L.B. Jarymowycz, F.G. Sperone, C. Toomajian, F. Roux and J. Bergelson. 2011. Adaptation to climate across the Arabidopsis thaliana genome. Science 334: 83-86.
    PubMed
  • Vila-Aiub, M., P. Neve and F. Roux. 2011. A unified approach to the estimation and interpretation of resistance costs in plants. Heredity 107(5): 386-394.
    PubMed
  • Roux, F.*, M. Colomé-Tatché*, C. Edelist, R. Wardenaar, P. Guerche, F. Hospital, V. Colot, R.C. Jansen and F. Johannes. 2011. Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature. Genetics 188: 1015-1017. *Authors contributed equally to this work. Highlighted by the Faculty of 1000 (June 2011) and The Scientist (October 2011 “Evolution, Tout de suite. Epigenetic perturbations could jump-start heritable variation.”).
    PubMed
  • Budar, F. and F. Roux. 2011. The role of organelle genomes in plant adaptation: time to get to work! Plant Signaling and Behavior 6(5): 635-639.
    PubMed
  • Bergelson, J. and F. Roux. 2010. Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nature Reviews Genetics 11: 867-879.
    PubMed
  • Moison, M., F. Roux, M. Quadrado, R. Duval, M. Ekovich, D.-H. Lê, M. Verzaux and F. Budar. 2010. Cytoplasmic phylogeny and evidence of cyto-nuclear co-adaptation in Arabidopsis thaliana. Plant Journal 63: 728-738.
    PubMed
  • Roux, F., L. Gao and J. Bergelson. 2010. Impact of initial pathogen density on resistance and tolerance in a polymorphic disease resistance system in Arabidopsis thaliana. Genetics 185: 283-291.
    PubMed
  • Brachi, B. , N. Faure, M. Horton, E. Flahauw, A. Vazquez, M. Nordborg, J. Bergelson, J. Cuguen and F. Roux. 2010. Linkage and association mapping of Arabidopsis thaliana flowering time in nature. PLoS Genetics 6(6):e1000940.
    PubMed
  • Platt, A., M. Horton, Y.S. Huang, Y. Li, A.E. Anastasio, N.W. Mulyati, J. Agren, O. Bossdorf, D. Byers, K. Donohue, M. Dunning, E.B. Holub, A. Hudson, V. Le Corre, O. Loudet, F. Roux, N. Warthmann, D. Weigel, L. Rivero, R. Scholl, M. Nordborg, J. Bergelson and J.O. Borevitz. 2010. The scale of population structure in Arabidopsis thaliana. PLoS Genetics 6: e1000843.
    PubMed
  • Atwell, S., Y. Huang, B.J. Vilhjalmsson, G. Willems, M. Horton, Y. Li, D. Meng, A. Platt, A. Tarone, T.T. Hu, R. Jiang, N.W. Muliyati, X. Zhang, M. A. Amer, I. Baxter, B. Brachi, J. Chory, C. Dean, M. Debieu, J. de Meaux, J.R. Ecker, N. Faure, J.M. Kniskern, J.D.G. Jones, T. Michael, A. Nemri, F. Roux, D.E. Salt, C. Tang, M. Todesco, M.B. Traw, D. Weigel, P. Marjoram, J.O. Borevitz, J. Bergelson and M. Nordborg. 2010. Genome-wide association study of 107 phenotypes in a common set of Arabidopsis thaliana inbred lines. Nature 465(7298): 627-631.
    PubMed
  • Neve, P., M. Vila-Aiub and F. Roux. 2009. Evolutionary-thinking in agricultural weed management. New Phytologist 184: 783-793.
    PubMed
  • Gao, L., F. Roux and J. Bergelson. 2009. Quantitative fitness effects of infection in a gene-for-gene system. New Phytologist 184: 465-494.
    PubMed